2JKM

FOCAL ADHESION KINASE CATALYTIC DOMAIN IN COMPLEX WITH BIS-ANILINO PYRIMIDINE INHIBITOR

Structural Biology Knowledgebase: 2JKM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 2JKM

Classification: TRANSFERASE

Total Structure Weight: 32323.09

Macromolecule Entities
Molecule Chains Length Organism Details
FOCAL ADHESION KINASE 1 A 276 Gallus gallus EC#: 2.7.10.2 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 411-686
Mutation: F516Y, A556S, T557N
Gene Name(s): PTK2 Gene View FAK FAK1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BII
Query on BII

A 2-{[5-CHLORO-2-({(1E,4R)-2-METHOXY-4-[(3R)- 3-(METHYLAMINO)PYRROLIDIN-1-YL]CYCLOHEXA- 2,5-DIEN-1-YLIDENE}AMINO)PYRIMIDIN-4-YL]AMINO}- N-(1-METHYLETHYL)BENZENESULFONAMIDE
C25 H32 Cl N7 O3 S
GLVPQZCTTHRANR-ZYGFWXSESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BII N/A in BindingDB
IC50: 17.76 nM  BindingMOAD
IC50: 17.76 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.208
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.06 α = 90.00
b = 45.60 β = 95.39
c = 66.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-28
  • Released Date: 2008-09-09
  • Deposition author(s): Lietha, D., Eck, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor