2JDR

STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH THE INHIBITOR A-443654

Structural Biology Knowledgebase: 2JDR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JDR

Classification: TRANSFERASE

Total Structure Weight: 41381.51

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-BETA SERINE/THREONINE-PROTEIN KINASE A 342 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 146-467
Details: PIFTIDE SEQUENCE (EEQEMFEDFDYIADW) REPLACES NATURAL PKB SEQUENCE AFTER RESIDUE 464
Gene Name(s): AKT2 Gene View
GLYCOGEN SYNTHASE KINASE-3 BETA C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: RESIDUES 3-12
Details: PEPTIDE DERIVED FROM THE KINASE GSK3-BETA
Gene Name(s): GSK3B Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L20
Query on L20

A (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H- INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE
C24 H23 N5 O
YWTBGJGMTBHQTM-IBGZPJMESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
L20 IC50: 0.5 - 30 nM (97 - 100) BindingDB

IC50: 0.5 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.193
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.93 α = 90.00
b = 60.99 β = 90.00
c = 124.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-12
  • Released Date: 2007-02-13
  • Deposition author(s): Davies, T.G., Verdonk, M.L., Graham, B., Saalau-Bethell, S., Hamlett, C.C.F., Mchardy, T., Collins, I., Garrett, M.D., Workman, P., Woodhead, S.J., Jhoti, H., Barford, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4