2J6L

Structure of aminoadipate-semialdehyde dehydrogenase

Structural Biology Knowledgebase: 2J6L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.137

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2J6L

Classification: OXIDOREDUCTASE

Total Structure Weight: 440067.28

Macromolecule Entities
Molecule Chains Length Organism Details
ALDEHYDE DEHYDROGENASE FAMILY 7 MEMBER A1 A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 500 Homo sapiens EC#: 1.2.1.31 IUBMB
Gene Name(s): ALDH7A1 Gene View ATQ1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B, C, D, E, F, G, H 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A, B, C, D, E, F, G, H BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D, E, F, G, H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.137
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 155.29 α = 90.00
b = 162.33 β = 94.17
c = 159.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-29
  • Released Date: 2006-10-12
  • Deposition author(s): Bunkoczi, G., Guo, K., Debreczeni, J.E., Smee, C., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J., von Delft, F., Oppermann, U.

Revision History

  • 2015-05-20
    Type: Function and keywords | Details: KEYWDS
  • 2015-05-20
    Type: Citation | Details: JRNL
  • 2015-05-20
    Type: Other | Details: REMARK 100,REMARK 525,MASTER
  • 2015-05-20
    Type: Non-polymer description | Details: FORMUL
  • 2015-05-20
    Type: Geometry validation | Details: REMARK 500
  • 2015-05-20
    Type: Polymer description | Details: COMPND
  • 2015-05-20
    Type: Entry authorship | Details: AUTHOR
  • 2015-05-20
    Type: Source and taxonomy | Details: SOURCE
  • 2015-05-20
    Type: Binding sites and description | Details: SITE
  • 2015-05-20
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-05-20
    Type: Version format compliance | Details: REMARK 4