2J0Q

THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 3.2 A RESOLUTION

Structural Biology Knowledgebase: 2J0Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 2J0Q

Classification: HYDROLASE

Total Structure Weight: 198966.23


Macromolecule Entities
Molecule Chains Length Organism Details
ATP-DEPENDENT RNA HELICASE DDX48 A, B 410 Homo sapiens EC#: 3.6.4.13 IUBMB
Gene Name(s): EIF4A3 Gene View DDX48 KIAA0111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN MAGO NASHI HOMOLOG C, F 146 Homo sapiens Gene Name(s): MAGOH Gene View MAGOHA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA-BINDING PROTEIN 8A D, G 109 Homo sapiens Fragment: RESIDUES 66-174
Gene Name(s): RBM8A Gene View RBM8 HSPC114 MDS014
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN CASC3 I, T 150 Homo sapiens Fragment: RESIDUES 137-286
Gene Name(s): CASC3 Gene View MLN51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' E, H 15 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.232
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.15 α = 90.00
b = 161.24 β = 90.00
c = 193.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-04
  • Released Date: 2006-08-30
  • Deposition author(s): Bono, F., Ebert, J., Lorentzen, E., Conti, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor