2IJG

Crystal Structure of cryptochrome 3 from Arabidopsis thaliana

Structural Biology Knowledgebase: 2IJG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2IJG

Classification: LYASE DNA BINDING PROTEIN

Total Structure Weight: 61707.40

Macromolecule Entities
Molecule Chains Length Organism Details
Cryptochrome DASH, chloroplast/mitochondrial X 526 Arabidopsis thaliana Gene Name(s): CRYD CRY3 At5g24850 F6A4.60

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

X FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
JSmol
MHF
Query on MHF

X 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
C20 H23 N7 O6
QYNUQALWYRSVHF-OLZOCXBDSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.238
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.90 α = 90.00
b = 117.90 β = 90.00
c = 216.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-29
  • Released Date: 2006-11-28
  • Deposition author(s): Huang, Y., Deisenhofer, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4