2GFD

GRP94 in complex with the novel HSP90 Inhibitor Radamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2GFD

Classification: CHAPERONE

Total Structure Weight: 54866.79

Macromolecule Entities
Molecule Chains Length Organism Details
Endoplasmin A, B 236 Canis lupus Fragment: N-terminal Domain of GRP94 Residues (69-337)
Gene Name(s): HSP90B1 Gene View GRP94 TRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RDA
Query on RDA

A, B METHYL 3-CHLORO-2-{3-[(2,5-DIHYDROXY-4-METHOXYPHENYL)AMINO]- 3-OXOPROPYL}-4,6-DIHYDROXYBENZOATE
C18 H18 Cl N O8
GUVWEHNRWHNDRF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

B PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A, B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RDA N/A in BindingDB
Kd: 870 nM  BindingMOAD
Kd: 520 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.211
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.49 α = 90.00
b = 84.57 β = 90.00
c = 95.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-21
  • Released Date: 2007-04-03
  • Deposition author(s): Immormino, R.M., Gewirth, D.T.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-08-02
    Type: Source and taxonomy