2G6V

The crystal structure of ribD from Escherichia coli

Structural Biology Knowledgebase: 2G6V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 2G6V

Classification: HYDROLASE OXIDOREDUCTASE

Total Structure Weight: 89600.02

Macromolecule Entities
Molecule Chains Length Organism Details
Riboflavin biosynthesis protein ribD A, B 402 Escherichia coli EC#: 1.1.1.193 IUBMB 3.5.4.26 IUBMB
Mutation: M7M, M58M, M100M, M127M, M128M, M142M, M163M, M285M, M286M
Gene Name(s): ribD AC066_26040 ACU57_11920 ACU87_11360 AM258_14555 AM264_10365 AM266_04470 AM268_09100 AN669_12765 AO733_00550 AO737_00550 AO743_04140 ATL78_14970 BN1843_7980 EL75_3336 EL79_3431 EL80_3385 ERS085341_00396 ERS085387_01316 ERS139228_01865 QR62_20785 QR63_20785 RR31_02435 SK74_04157 SR35_02050 XB00_10475
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.244
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 172.60 α = 90.00
b = 172.60 β = 90.00
c = 76.38 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-25
  • Released Date: 2007-02-06
  • Deposition author(s): Stenmark, P., Moche, M., Gurmu, D., Nordlund, P., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4