Structure of Turnip Yellow Mosaic Virus at 100 K
DOI:10.2210/pdb2fz2/pdb   NDB ID: PR0191
Primary Citation
  •   Molecular Description Hide
    Classification: Virus/rna  [ VIPERdb   ]
    Structure Weight: 61492.80
    Molecule: 5'-R(*CP*CP*C)-3'
    Polymer: 1 Type: rna Length: 3
    Chains: D
    Molecule: Coat protein
    Polymer: 2 Type: protein Length: 189
    Chains: A, B, C
    Fragment: Viral coat protein
    Organism: Turnip yellow mosaic virus (Australian isolate)
    UniProtKB: Search PDB | P20125   Protein Feature View
  •   Structure Validation Hide

    View the full validation report  


  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Turnip yellow mosaic virus   Taxonomy   Expression System: Brassica rapa subsp. chinensis  
  •   Related PDB Entries Hide
    Identifier Details
    1auy   The same structure done at room temperature. 
    1w39   The structure at 100 K in a different space group of the same virus with the RNA removed prior to crystallization. 
    2FZ1   The structure at 100 K of the same virus with the RNA removed prior to crystallization. 
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PR0191
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
No info available for origin of biological assembly
Downloadable viewers:
  •   MyPDB Personal Annotations Hide
  •   Deposition Summary Hide
    Authors:   Larson, S.B.,  Lucas, R.W.,  McPherson, A.

    Deposition:   2006-02-08
    Release:   2006-02-21
    Last Modified (REVDAT):   2011-07-13
  •   Revision History    Hide
    Mouse over text for details
    Version format compliance
    Source and taxonomy
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.90
    R-Value: 0.277 (obs.)
    R-Free: 0.289
    Space Group: P 64 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 511.53 α = 90.00 
    b = 511.53 β = 90.00 
    c = 303.76 γ = 120.00