2FXE

X-ray crystal structure of HIV-1 protease CRM mutant complexed with atazanavir (BMS-232632)

Structural Biology Knowledgebase: 2FXE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FXE

Classification: HYDROLASE

Total Structure Weight: 22687.87

Macromolecule Entities
Molecule Chains Length Organism Details
pol protein A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: HIV-1 PROTEASE
Mutation: Q7K, L10I, I13V, L33I, S37N, R41K, L63I, C67A, C95A
Gene Name(s): gag-pol

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
DR7
Query on DR7

A (3S,8S,9S,12S)-3,12-BIS(1,1-DIMETHYLETHYL)- 8-HYDROXY-4,11-DIOXO-9-(PHENYLMETHYL)-6-[[4- (2-PYRIDINYL)PHENYL]METHYL]-2,5,6,10,13-PENTAAZATETRADECANEDIOIC ACID DIMETHYL ESTER
ATAZANAVIR; METHYL [(1S,4S,5S,10S)-4-BENZYL- 1,10-DI-TERT-BUTYL-5-HYDROXY-2,9,12-TRIOXO- 7-(4-PYRIDIN-2-YLBENZYL)-13-OXA-3,7,8,11- TETRAAZATETRADEC-1-YL]CARBAMATE (Synonym)
C38 H52 N6 O7
AXRYRYVKAWYZBR-GASGPIRDSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DR7 Kd: 0.4 nM (89) BindingDB
Ki: 0.24 nM (89) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.169
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.19 α = 90.00
b = 58.21 β = 90.00
c = 61.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-05
  • Released Date: 2007-02-20
  • Deposition author(s): Sheriff, S., Klei, H.E.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4