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HIV-1 DIS kissing-loop in complex with lividomycin
DOI:10.2210/pdb2fd0/pdb   NDB ID: DR0026
2FD0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 16646.24
    Molecule: HIV-1 DIS RNA
    Polymer: 1 Type: rna Length: 23
    Chains: A, B
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2FCX  HIV-1 DIS kissing-loop in complex with Neamine 
    2FCY  HIV-1 DIS kissing-loop in complex with Neomycin 
    2FCZ  HIV-1 DIS kissing-loop in complex with Ribostamycin 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    K
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    K K
    POTASSIUM ION
    LIV
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    LIV C29 H55 N5 O18
    (2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO- 2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)- 3,5-DIAMINO-2-((2S,3R,5S,6R)-3-AMINO-5-HYDROXY- 6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)- 6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMETHYL)- TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO- 2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO- 2H-PYRAN-3,4,5-TRIOL
    LIV:2FD0
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5BU
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    5BU C9 H12 Br N2 O9 P U rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DR0026
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Ennifar, E.,  Paillart, J.C.,  Marquet, R.,  Dumas, P.

    Deposition:   2005-12-13
    Release:   2006-05-16
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.245 (obs.)
    R-Free: 0.245
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 27.14 α = 90.00 
    b = 115.33 β = 90.00 
    c = 95.25 γ = 90.00