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HIV-1 DIS kissing-loop in complex with ribostamycin
DOI:10.2210/pdb2fcz/pdb   NDB ID: DR0025
2FCZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 31835.98
    Molecule: HIV-1 DIS RNA
    Polymer: 1 Type: rna Length: 23
    Chains: A, B, C, D
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1XP7  Subtype F HIV-1 DIS kissing-loop 
    1Y3S  Subtype F HIV-1 DIS kissing-loop 
    2FCX  HIV-1 DIS kissing-loop in complex with Neamine 
    2FCY  HIV-1 DIS kissing-loop in complex with Neomycin 
    2FD0  HIV-1 DIS kissing-loop in complex with lividomycin 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    K
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    K K
    POTASSIUM ION
    RIO
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    RIO C17 H34 N4 O10
    RIBOSTAMYCIN
    RIO:2FCZ
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5BU
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    5BU C9 H12 Br N2 O9 P U rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DR0025
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Ennifar, E.,  Paillart, J.C.,  Marquet, R.,  Dumas, P.

    Deposition:   2005-12-13
    Release:   2006-05-16
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.01
    R-Value: 0.238 (obs.)
    R-Free: 0.256
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 112.13 α = 90.00 
    b = 27.19 β = 116.72 
    c = 106.91 γ = 90.00