2FCZ

HIV-1 DIS kissing-loop in complex with ribostamycin

Structural Biology Knowledgebase: 2FCZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FCZ

Classification: RNA

Total Structure Weight: 31835.97

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 DIS RNA A, B, C, D 23 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIO
Query on RIO

A, B, C, D RIBOSTAMYCIN
2R,,6-DIAMINO-2-(3,4-DIOL; (1R (Synonym)
C17 H34 N4 O10
NSKGQURZWSPSBC-VVPCINPTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
A, B, C, D RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.238
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 112.13 α = 90.00
b = 27.19 β = 116.72
c = 106.91 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-12-13
  • Released Date: 2006-05-16
  • Deposition author(s): Ennifar, E., Paillart, J.C., Marquet, R., Dumas, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4