2FCY

HIV-1 DIS kissing-loop in complex with Neomycin

Structural Biology Knowledgebase: 2FCY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FCY

Classification: RNA

Total Structure Weight: 16526.24

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 DIS RNA A, B 23 synthetic

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NMY
Query on NMY

A, B NEOMYCIN
MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN (Synonym)
C23 H46 N6 O13
PGBHMTALBVVCIT-VCIWKGPPSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
A, B RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.235
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 27.10 α = 90.00
b = 113.70 β = 90.00
c = 96.17 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-12-13
  • Released Date: 2006-05-16
  • Deposition author(s): Ennifar, E., Paillart, J.C., Marquet, R., Dumas, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4