2FCX

HIV-1 DIS kissing-loop in complex with neamine

Structural Biology Knowledgebase: 2FCX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.267

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FCX

Classification: RNA

Total Structure Weight: 15728.31

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 DIS RNA A, B 23 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XXX
Query on XXX

A, B (2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6- DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO- 2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-3,4-DIOL
NEAMINE, (Synonym)
C12 H26 N4 O6
SYJXFKPQNSDJLI-HKEUSBCWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
A, B RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.267
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 27.00 α = 90.00
b = 113.39 β = 90.00
c = 95.04 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-12-13
  • Released Date: 2006-05-16
  • Deposition author(s): Ennifar, E., Paillart, J.C., Marquet, R., Dumas, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4