2F8W

Crystal structure of d(CACGTG)2

Structural Biology Knowledgebase: 2F8W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 2F8W

Classification: DNA

Total Structure Weight: 3894.93

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*AP*CP*GP*TP*G)-3' A, B 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
13D
Query on 13D

B 1,3-DIAMINOPROPANE
C3 H10 N2
XFNJVJPLKCPIBV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.180
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 18.42 α = 90.00
b = 30.74 β = 90.00
c = 43.18 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-12-04
  • Released Date: 2006-01-31
  • Deposition author(s): Narayana, N., Shamala, N., Ganesh, K.N., Viswamitra, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4