2F8S

Crystal structure of Aa-Ago with externally-bound siRNA

Structural Biology Knowledgebase: 2F8S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F8S

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 180492.64


Macromolecule Entities
Molecule Chains Length Organism Details
Argonaute protein A, B 706 Aquifex aeolicus Gene Name(s): aq_1447
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*AP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3' C, D 22 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.212
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.70 α = 90.00
b = 117.52 β = 99.12
c = 98.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-03
  • Released Date: 2006-10-31
  • Deposition author(s): Yuan, Y.R., Chen, H.Y., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4