2F4S

A-site RNA in complex with neamine

Structural Biology Knowledgebase: 2F4S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F4S

Classification: RNA

Total Structure Weight: 13808.60

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' A, B 21 synthetic A-site RNA'

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XXX
Query on XXX

B (2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6- DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO- 2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-3,4-DIOL
NEOMYCIN A, NEAMINE (Synonym)
C12 H26 N4 O6
SYJXFKPQNSDJLI-HKEUSBCWSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XXX N/A in BindingDB
N/A in BindingMoad
Kd: 19000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.225
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 33.06 α = 90.00
b = 47.31 β = 90.00
c = 85.34 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-11-24
  • Released Date: 2006-05-02
  • Deposition author(s): Murray, J.B., Meroueh, S.O., Russell, R.J., Lentzen, G., Haddad, J., Mobashery, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4