Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes
DOI:10.2210/pdb2euv/pdb   NDB ID: PD0728
2EUV
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Cell Cycle/dna
    Structure Weight: 48149.59
    Molecule: 5'-D(*TP*GP*CP*AP*AP*CP*AP*CP*AP*AP*AP*TP*AP*C)-3'
    Polymer: 1 Type: dna Length: 14
    Chains: B
    Mutation: I200T
    Details: vG1C MSE DNA strand 1
    Molecule: 5'-D(*AP*GP*TP*AP*TP*TP*TP*GP*TP*GP*TP*TP*GP*C)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: C
    Details: vG1C MSE DNA strand 2
    Molecule: NDT80 protein
    Polymer: 3 Type: protein Length: 345
    Chains: A
    Fragment: Ndt80 DNA-binding Domain
    Organism: Saccharomyces cerevisiae
    Gene Names: NDT80 DAS1 YHR124W
    UniProtKB: Protein Feature View | Search PDB | P38830  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli bl21  
     
  •   Related PDB Entries Hide
    Identifier Details
    1M6U    
    1M7U    
    1MN4    
    1MNN    
    2EHI    
    2EHJ    
    2ETW    
    2EUW    
    2EUX    
    2EUZ    
    2EVF    
    2EVG    
    2EVH    
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0728
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lamoureux, J.S.,  Glover, J.N.

    Deposition:   2005-10-30
    Release:   2006-03-21
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.94
    R-Value: 0.195 (obs.)
    R-Free: 0.233
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.23 α = 90.00 
    b = 79.25 β = 90.00 
    c = 160.88 γ = 90.00