2C4R

CATALYTIC DOMAIN OF E. COLI RNASE E

Structural Biology Knowledgebase: 2C4R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.319

Literature

Macromolecules
Sequence Display for 2C4R

Classification: HYDROLASE

Total Structure Weight: 61492.72


Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE E L 517 Escherichia coli EC#: 3.1.26.12 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 1-510
Gene Name(s): rne ams hmp1 b1084 JW1071
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
SSRNA MOLECULE: 5'-R(*AP*CP*AP*GP*UP*AP*UP*UP*UP*GP)-3' R 10 Escherichia coli

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.319
  • Space Group: P 62 2 2

Unit Cell:

Length (Å) Angle (°)
a = 196.59 α = 90.00
b = 196.59 β = 90.00
c = 140.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-21
  • Released Date: 2005-10-25
  • Deposition author(s): Marcaida, M.J., Callaghan, A.J., Luisi, B.F.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4