2C21

Specificity of the Trypanothione-dependednt Leishmania major Glyoxalase I: Structure and biochemical comparison with the human enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 2C21

Classification: LYASE

Total Structure Weight: 101074.91

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPANOTHIONE-DEPENDENT GLYOXALASE I A, B, C..., D, E, FA, B, C, D, E, F 144 Leishmania major EC#: 4.1.1 IUBMB
Gene Name(s): GLO1 Gene View LMJF_35_3010
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B, C, D, E (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A, D (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, C, E NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.155
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 130.19 α = 90.00
b = 148.96 β = 90.00
c = 50.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-23
  • Released Date: 2006-02-01
  • Deposition author(s): Ariza, A., Vickers, T.J., Greig, N., Armour, K.A., Eggleston, I.M., Fairlamb, A.H., Bond, C.S.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance