2C0B

Catalytic domain of E. coli RNase E in complex with 13-mer RNA

Structural Biology Knowledgebase: 2C0B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.18 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 2C0B

Classification: HYDROLASE

Total Structure Weight: 62411.22


Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE E L 517 Escherichia coli EC#: 3.1.26.12 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 1-510
Gene Name(s): rne ams hmp1 b1084 JW1071
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP*UP*AP*CP*AP*GP*UP*AP*UP*UP*UP*G)-3' R 13 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.18 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.252
  • Space Group: P 62 2 2

Unit Cell:

Length (Å) Angle (°)
a = 196.05 α = 90.00
b = 196.05 β = 90.00
c = 142.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-30
  • Released Date: 2005-10-14
  • Deposition author(s): Marcaida, M.J., Callaghan, A.J., Scott, W.G., Luisi, B.F.

Revision History

  • 2015-05-20
    Type: Source and taxonomy | Details: SOURCE
  • 2015-05-20
    Type: Entry title | Details: TITLE
  • 2015-05-20
    Type: Non-polymer description | Details: FORMUL
  • 2015-05-20
    Type: Version format compliance | Details: REMARK 4
  • 2015-05-20
    Type: Polymer description | Details: COMPND
  • 2015-05-20
    Type: Other | Details: TER
  • 2015-05-20
    Type: Atom nomenclature | Details: ATOM
  • 2015-05-20
    Type: Biological assembly | Details: REMARK 350