2BZT

NMR structure of the bacterial protein YFHJ from E. coli


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: LOWEST ENERGY 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

YfhJ, a molecular adaptor in iron-sulfur cluster formation or a frataxin-like protein?

Pastore, C.Adinolfi, S.Huynen, M.A.Rybin, V.Martin, S.Mayer, M.Bukau, B.Pastore, A.

(2006) Structure 14: 857-867

  • DOI: https://doi.org/10.1016/j.str.2006.02.010
  • Primary Citation of Related Structures:  
    2BZT

  • PubMed Abstract: 

    The yfhJ gene is part of the isc operon, which encodes the machinery devoted to assemble iron-sulfur clusters in prokaryotes. Its transcript is a small acidic protein that binds the desulfurase IscS, which is essential in iron-specific metabolic pathways. To understand its cellular role, we have characterized the structure of YfhJ in solution and its interactions with potential cellular partners. It contains a modified winged helix motif, usually present in DNA binding proteins, and is able to bind iron cations. The IscS interaction surface is the same as that involved in iron binding. This observation and the pattern of conservation through species strongly suggest that YfhJ is a molecular adaptor that is able to modulate the function of IscS in iron-sulfur cluster formation. The remarkable similarity between the in vitro behavior of YfhJ and that of the protein frataxin also suggests new hypotheses regarding the functional role of both proteins.


  • Organizational Affiliation

    National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom. apastor@nimr.mrc.ac.uk


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN ISCX66Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0C0L9 (Escherichia coli (strain K12))
Explore P0C0L9 
Go to UniProtKB:  P0C0L9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C0L9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: LOWEST ENERGY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-12-06
    Type: Initial release
  • Version 1.1: 2012-05-30
    Changes: Atomic model, Database references, Derived calculations, Other, Source and taxonomy, Structure summary, Version format compliance
  • Version 2.0: 2018-01-17
    Changes: Atomic model, Data collection, Database references, Structure summary
  • Version 2.1: 2020-01-15
    Changes: Data collection, Other