2BQV

HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR AHA455

Structural Biology Knowledgebase: 2BQV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BQV

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 22196.40

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Details: COMPLEX WITH INHIBITOR AHA455
Gene Name(s): pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A1A
Query on A1A

A 6-AMINO HEXANOIC ACID
C33 H40 N4 O6
KEFISYJDRSSULW-GQPDOWDHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A1A Ki: 9 nM (98) BindingDB

Ki: 9 nM  BindingMOAD
Ki: 9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.08 α = 90.00
b = 87.45 β = 90.00
c = 47.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-04-28
  • Released Date: 2005-12-14
  • Deposition author(s): Unge, T., Ekegren, J.K., Schenk, H.V., Zreik Safa, M., Wallberg, H., Samuelsson, B., Hallberg, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4