2BN7

Mn substituted E. coli Aminopeptidase P in complex with product and Zn


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 2BN7

Classification: HYDROLASE

Total Structure Weight: 50379.05

Macromolecule Entities
Molecule Chains Length Organism Details
XAA-PRO AMINOPEPTIDASE A 440 Escherichia coli EC#: 3.4.11.9 IUBMB
Details: DIPEPTIDE PRODUCT OF AMINOPEPTIDASE P (FORMED BY CLEVAGE OF XAA-PRO-LEU TRIPEPTIDE SUBSTRATE)
Gene Name(s): pepP b2908 JW2876
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LEU
Query on LEU

A LEUCINE
C6 H13 N O2
ROHFNLRQFUQHCH-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PRO
Query on PRO

A PROLINE
C5 H9 N O2
ONIBWKKTOPOVIA-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.165
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 139.70 α = 90.00
b = 139.70 β = 90.00
c = 230.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-22
  • Released Date: 2005-09-29
  • Deposition author(s): Graham, S.C., Bond, C.S., Freeman, H.C., Guss, J.M.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance