2B4X

Crystal Structure of Antithrombin-III

Structural Biology Knowledgebase: 2B4X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2B4X

Classification: BLOOD CLOTTING

Total Structure Weight: 99268.95

Macromolecule Entities
Molecule Chains Length Organism Details
Antithrombin-III I 427 Homo sapiens Mutation: N135A, Y220L
Gene Name(s): SERPINC1 Gene View AT3 PRO0309
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antithrombin-III L 427 Homo sapiens Gene Name(s): SERPINC1 Gene View AT3 PRO0309

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

I, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.228
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.47 α = 90.00
b = 98.67 β = 105.00
c = 89.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-27
  • Released Date: 2006-10-10
  • Deposition author(s): Adams, T.E., Huntington, J.A., Johnson, D.J.D., Bock, S.C.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4