2AT9

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.0 Å
  • Aggregation State: 2d Array
  • Reconstruction Method: Crystallography

Literature

Macromolecules
Sequence Display for 2AT9

Classification: PHOTORECEPTOR

Total Structure Weight: 34291.59

Macromolecule Entities
Molecule Chains Length Organism Details
BACTERIORHODOPSIN A 248 Halobacterium salinarum Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2DP
Query on 2DP

A 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]- [1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16- YL]GLYCEROL
C47 H98 O11 P2
ORVRQEXCVQTLMU-JCHKDBOHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.0 Å
  • Reconstruction Method: Crystallography

Unit Cell:

Length (Å) Angle (°)
a = 62.45 α = 90.00
b = 62.45 β = 90.00
c = 100.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-12-17
  • Released Date: 1999-04-27
  • Deposition author(s): Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.

Revision History

  • Version 1_0: 1999-04-27

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance