POP-OUT | CLOSE
MyPDB Login - Username: Password:

About: MyPDB stores and automatically runs your favorite queries. Email alerts are sent when matching structures are found.

    MyPDB Login
MyPDB: Login | Register
RCSB PDB Protein Data Bank | Home A Member of the wwPDB

An Information Portal to Biological Macromolecular Structures

As of Tuesday Feb 02, 2010 at 4 PM PST there are 63093 Structures RSS Feed for the Latest Released Structures Help | Latest Released  |  PDB Statistics Help | PDB Statistics
RCSB PDB Protein Data Bank | Home

Print Options: BW Safe Color Safe Print




URL:
 
 
Structural, physical and biological characteristics of RNA:DNA binding agent N8-actinomycin D
 
 
DOI:10.2210/pdb209d/pdb   NDB ID: DDH051
209D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 5150.55
     
    Molecule:DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:8
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DPR     D-PROLINE C5 H9 N O2 3DLigand Explorer Link out to Ligand Expos:DPR Link out to SuperLigands:DPR Link out to SuperHapten:DPR
    DTH     D-THREONINE C4 H9 N O3 3DLigand Explorer Link out to Ligand Expos:DTH Link out to SuperLigands:DTH Link out to SuperHapten:DTH
    DVA     D-VALINE C5 H11 N O2 3DLigand Explorer Link out to Ligand Expos:DVA Link out to SuperLigands:DVA Link out to SuperHapten:DVA
    MVA     N-METHYLVALINE C6 H13 N O2 3DLigand Explorer Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA
    PXA     2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO- 3-OXO(8-AZA)PHENOXAZINE C15 H11 N3 O4 3DLigand Explorer Link out to Ligand Expos:PXA Link out to SuperLigands:PXA Link out to SuperHapten:PXA
    SAR     SARCOSINE C3 H7 N O2 3DLigand Explorer Link out to Ligand Expos:SAR Link out to SuperLigands:SAR Link out to SuperHapten:SAR
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    DPR D-PROLINE(type: dPeptideLinking) C5 H9 N O2 Link out to Ligand Expos:DPR Link out to SuperLigands:DPR Link out to SuperHapten:DPR 2D
    DVA D-VALINE(type: dPeptideLinking) C5 H11 N O2 Link out to Ligand Expos:DVA Link out to SuperLigands:DVA Link out to SuperHapten:DVA 2D
    DTH D-THREONINE(type: dPeptideLinking) C4 H9 N O3 Link out to Ligand Expos:DTH Link out to SuperLigands:DTH Link out to SuperHapten:DTH 2D
    MVA N-METHYLVALINE (parent: VAL)(type: lPeptideLinking) C6 H13 N O2 Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA 2D
    SAR SARCOSINE (parent: GLY)(type: glycine) C3 H7 N O2 Link out to Ligand Expos:SAR Link out to SuperLigands:SAR Link out to SuperHapten:SAR 2D
     
     
Reset Layout
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Shinomiya, M.,   Chu, W.,   Carlson, R.G.,   Weaver, R.F.,   Takusagawa, F.

    Deposition:   1995-05-01
    Release:   1995-10-15
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 3.00
    R-Value: 0.173 (obs.)
    R-Free: n/a
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.30 α = 90.00 
    b = 62.30 β = 90.00 
    c = 42.97 γ = 120.00