1ZKF

Cyrstal Structure of Human Cyclophilin-A in Complex with suc-AGPF-pNA

Structural Biology Knowledgebase: 1ZKF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ZKF

Classification: ISOMERASE / ISOMERASE SUBSTRATE

Total Structure Weight: 37294.52

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase A A, B 165 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIA Gene View CYPA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Suc-ALA-GLY-PRO-PHE-pNA C, D 6 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
SIN
Query on SIN
C, D NON-POLYMER C4 H6 O4 --
NIT
Query on NIT
C, D NON-POLYMER C6 H6 N2 O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.168
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.76 α = 90.00
b = 108.82 β = 90.00
c = 118.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-02
  • Released Date: 2006-04-11
  • Deposition author(s): Eisenmesser, E.Z., Thai, V., Pozharski, E., Kern, D.

Revision History

  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords