1Z67

Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri

Structural Biology Knowledgebase: 1Z67 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 1Z67

Classification: Structural Genomics Unknown Function

Total Structure Weight: 14257.75

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein S4005 A 135 Shigella flexneri Mutation: M1M, M123M
Gene Name(s): yidB S4005 SF3766 NCTC1_04060
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.162
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 57.48 α = 90.00
b = 40.48 β = 93.78
c = 48.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-21
  • Released Date: 2005-05-03
  • Deposition author(s): Osipiuk, J., Maltseva, N., Dementieva, I., Clancy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name