1YWG

The structure of glyceraldehyde-3-phosphate dehydrogenase from Plasmodium falciparum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1YWG

Classification: OXIDOREDUCTASE

Total Structure Weight: 149378.47

Macromolecule Entities
Molecule Chains Length Organism Details
glyceraldehyde-3-phosphate dehydrogenase O, P, Q, R 337 Plasmodium falciparum EC#: 1.2.1.12 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

O, P, Q, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.231
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 79.60 α = 90.00
b = 79.60 β = 90.00
c = 406.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-17
  • Released Date: 2005-11-29
  • Deposition author(s): Satchell, J.F., Klonis, N., Malby, R.L., Adisa, A., Alpyurek, A.E., Colman, P.M., Tilley, L.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2014-11-12
    Type: Structure summary