1YVN

THE YEAST ACTIN VAL 159 ASN MUTANT COMPLEX WITH HUMAN GELSOLIN SEGMENT 1.

Structural Biology Knowledgebase: 1YVN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1YVN

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 56490.46

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (ACTIN) A 375 Saccharomyces cerevisiae Mutation: V159N
Details: MG-ATP BOUND ACTIN
Gene Name(s): ACT1 ABY1 END7 YFL039C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (GELSOLIN) G 125 Homo sapiens Fragment: FRAGMENT 1
Details: CA(2+)-BOUND PROTEIN
Gene Name(s): GSN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

G CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.187
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 176.10 α = 90.00
b = 68.08 β = 102.24
c = 54.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-03-23
  • Released Date: 2000-03-23
  • Deposition author(s): Vorobiev, S.M., Belmont, L.D., Drubin, D.G., Almo, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4