1YUM

Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa

Structural Biology Knowledgebase: 1YUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YUM

Classification: TRANSFERASE

Total Structure Weight: 110409.33

Macromolecule Entities
Molecule Chains Length Organism Details
'Probable nicotinate-nucleotide adenylyltransferase A, B, C, D 242 Pseudomonas aeruginosa EC#: 2.7.7.18 IUBMB
Gene Name(s): nadD PA4006

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCN
Query on NCN

A, B, C, D NICOTINATE MONONUCLEOTIDE
NAMN (Synonym)
C11 H14 N O9 P
JOUIQRNQJGXQDC-ZYUZMQFOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A, B, C, D CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.191
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 65.18 α = 90.00
b = 110.65 β = 89.99
c = 65.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-14
  • Released Date: 2005-11-08
  • Deposition author(s): Yoon, H.J., Kim, H.L., Mikami, B., Suh, S.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4