1YL6

crystal structure of Mycobacterium tuberculosis dihydrodipicolinate reductase (Rv2773c) (crystal form B)

Structural Biology Knowledgebase: 1YL6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1YL6

Classification: OXIDOREDUCTASE

Total Structure Weight: 51455.46

Macromolecule Entities
Molecule Chains Length Organism Details
Dihydrodipicolinate reductase A, B 245 Mycobacterium tuberculosis EC#: 1.17.1.8 IUBMB
Gene Name(s): dapB Rv2773c MTV002.38c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.13 α = 90.00
b = 89.46 β = 90.00
c = 77.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-19
  • Released Date: 2006-01-17
  • Deposition author(s): Janowski, R., Kefala, G., Weiss, M.S., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4