1YGY

Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis

Structural Biology Knowledgebase: 1YGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1YGY

Classification: Oxidoreductase

Total Structure Weight: 109861.77

Macromolecule Entities
Molecule Chains Length Organism Details
D-3-phosphoglycerate dehydrogenase A, B 529 Mycobacterium tuberculosis EC#: 1.1.1.95 IUBMB
Gene Name(s): serA Rv2996c MTV012.10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAR
Query on TAR

A, B D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 165.51 α = 90.00
b = 165.51 β = 90.00
c = 218.14 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-05
  • Released Date: 2005-01-25
  • Deposition author(s): Dey, S., Grant, G.A., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values