1YGD

T-To-T(High) quaternary transitions in human hemoglobin: betaW37E alpha zinc beta oxy (10 TEST SETS)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1YGD

Classification: TRANSPORT PROTEIN

Total Structure Weight: 64580.11

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin alpha chain A, C 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemoglobin beta chain B, D 146 Homo sapiens Mutation: V1M, W37E
Gene Name(s): HBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZNH
Query on ZNH

A, C PROTOPORPHYRIN IX CONTAINING ZN
C34 H32 N4 O4 Zn
FUTVBRXUIKZACV-UMRYFLQFDI
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

B, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXY
Query on OXY

B, D OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.190
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 96.30 α = 90.00
b = 99.10 β = 90.00
c = 66.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-04
  • Released Date: 2005-01-11
  • Deposition author(s): Kavanaugh, J.S., Rogers, P.H., Arnone, A.

Revision History

  • Version 1_0: 2005-01-11

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance