1YG6

ClpP

Structural Biology Knowledgebase: 1YG6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YG6

Classification: HYDROLASE

Total Structure Weight: 303872.45

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent Clp protease proteolytic subunit A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 193 Escherichia coli EC#: 3.4.21.92 IUBMB
Gene Name(s): clpP lopP b0437 JW0427

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B, C, D, E, F, G, H, I, J, K, L, M, N (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.221
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 192.50 α = 90.00
b = 103.30 β = 98.40
c = 159.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-04
  • Released Date: 2006-04-04
  • Deposition author(s): Bewley, M.C., Graziano, V., Griffin, K., Flanagan, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4