1XZP

Structure of the GTP-binding protein TrmE from Thermotoga maritima

Structural Biology Knowledgebase: 1XZP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XZP

Classification: HYDROLASE

Total Structure Weight: 71165.29

Macromolecule Entities
Molecule Chains Length Organism Details
Probable tRNA modification GTPase trmE A 482 Thermotoga maritima EC#: 3.6.5 IUBMB
Gene Name(s): mnmE trmE TM_0267
Probable tRNA modification GTPase trmE B 150 Thermotoga maritima EC#: 3.6.5 IUBMB
Fragment: N-terminal domain (residues 1-118)
Gene Name(s): mnmE trmE TM_0267

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.226
  • Space Group: P 62
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.85 α = 90.00
b = 128.85 β = 90.00
c = 107.16 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-11-12
  • Released Date: 2005-01-04
  • Deposition author(s): Scrima, A., Vetter, I.R., Armengod, M.E., Wittinghofer, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4