1XOI

Human Liver Glycogen Phosphorylase A complexed with Chloroindoloyl glycine amide

Structural Biology Knowledgebase: 1XOI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XOI

Classification: TRANSFERASE

Total Structure Weight: 195988.56

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen phosphorylase, liver form A, B 846 Homo sapiens EC#: 2.4.1.1 IUBMB
Mutation: G323A
Gene Name(s): PYGL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
288
Query on 288

A, B 5-CHLORO-1H-INDOLE-2-CARBOXYLIC ACID{[CYCLOPENTYL- (2-HYDROXY-ETHYL)-CARBAMOYL]-METHYL}-AMIDE
C18 H24 Cl N3 O3
VXABTOCIIZSEPD-QGZVFWFLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NBG
Query on NBG

A, B 1-N-ACETYL-BETA-D-GLUCOSAMINE
C8 H15 N O6
IBONACLSSOLHFU-JAJWTYFOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
288 IC50: 570 nM (99) BindingDB

IC50: 57 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.206
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 123.91 α = 90.00
b = 123.91 β = 90.00
c = 123.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-06
  • Released Date: 2005-04-12
  • Deposition author(s): Wright, S.W., Rath, V.L., Gibbs, E.M., Treadway, J.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update