1XMK

The Crystal structure of the Zb domain from the RNA editing enzyme ADAR1

Structural Biology Knowledgebase: 1XMK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Observed: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XMK

Classification: HYDROLASE

Total Structure Weight: 9359.86

Macromolecule Entities
Molecule Chains Length Organism Details
Double-stranded RNA-specific adenosine deaminase A 79 Homo sapiens EC#: 3.5.4.37 IUBMB
Gene Name(s): ADAR Gene View ADAR1 DSRAD G1P1 IFI4

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Observed: 0.145
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.56 α = 90.00
b = 43.53 β = 90.00
c = 45.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-03
  • Released Date: 2005-08-02
  • Deposition author(s): Athanasiadis, A., Placido, D., Maas, S., Brown II, B.A., Lowenhaupt, K., Rich, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4