1XI3

Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001

Structural Biology Knowledgebase: 1XI3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XI3

Classification: transferase

Total Structure Weight: 47221.09

Macromolecule Entities
Molecule Chains Length Organism Details
Thiamine phosphate pyrophosphorylase A, B 215 Pyrococcus furiosus EC#: 2.5.1.3 IUBMB
Gene Name(s): thiE PF1334

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.188
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 72.39 α = 90.00
b = 81.21 β = 90.00
c = 152.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-21
  • Released Date: 2004-09-28
  • Deposition author(s): Zhou, W., Chen, L., Tempel, W., Liu, Z.-J., Habel, J., Lee, D., Lin, D., Chang, S.-H., Dillard, B.D., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Kelley, L.-L.C., Lee, H.-S., Li, T., Poole II, F.L., Shah, C., Sugar, F.J., Arendall III, W.B., Richardson, J.S., Richardson, D.C., Rose, J.P., Adams, M.W.W., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4