1WXI

E.coli NAD Synthetase, AMP.PP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1WXI

Classification: LIGASE

Total Structure Weight: 31589.77

Macromolecule Entities
Molecule Chains Length Organism Details
NH(3)-dependent NAD(+) synthetase A 275 Escherichia coli EC#: 6.3.1.5 IUBMB
Gene Name(s): nadE efg ntrL b1740 JW1729
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DPO
Query on DPO

A DIPHOSPHATE
O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.176
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.44 α = 90.00
b = 67.92 β = 104.24
c = 48.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-23
  • Released Date: 2005-02-15
  • Deposition author(s): Jauch, R., Humm, A., Huber, R., Wahl, M.C.

Revision History

  • Version 1_0: 2005-02-15

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2013-06-26

    Type: Derived calculations