1WEJ

IGG1 FAB FRAGMENT (OF E8 ANTIBODY) COMPLEXED WITH HORSE CYTOCHROME C AT 1.8 A RESOLUTION

Structural Biology Knowledgebase: 1WEJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1WEJ

Classification: COMPLEX (ANTIBODY / ELECTRON TRANSPORT)

Total Structure Weight: 59940.48

Macromolecule Entities
Molecule Chains Length Organism Details
E8 ANTIBODY L 214 Mus musculus Fragment: FAB
Mutation: T85S, H89Q, V106I, L118F
Details: IGG1 KAPPA MOUSE MONOCLONAL ANTIBODY
Gene Name(s):
E8 ANTIBODY H 223 Mus musculus Fragment: FAB
Mutation: K3Q, L5Q, E6Q, S14P, Q43K, N55S, E57N, I58T, G66D, T67K, T76S, ΔV97, ΔR98, R97A, G100D, S101Y, S102G, Q103N, E104F, P105D, K119E, S132T, Q135L, T136K, N137S, S182T, E195Q
Details: IGG1 KAPPA MOUSE MONOCLONAL ANTIBODY
CYTOCHROME C F 105 Equus caballus Details: ELECTRON TRANSPORT PROTEIN WITH HEME
Gene Name(s): CYCS Gene View CYC

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

F PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
F NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.200
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.58 α = 90.00
b = 72.54 β = 90.00
c = 94.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-26
  • Released Date: 1998-12-09
  • Deposition author(s): Mylvaganam, S.E., Paterson, Y., Getzoff, E.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4