1W7X

FACTOR7- 413 COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1W7X

Classification: HYDROLASE

Total Structure Weight: 35281.39

Macromolecule Entities
Molecule Chains Length Organism Details
BLOOD COAGULATION FACTOR VIIA H 254 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: FACTOR VII HEAVY CHAIN, RESIDUES 213-466
Gene Name(s): F7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BLOOD COAGULATION FACTOR VIIA L 55 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: FACTOR VII LIGHT CHAIN, RESIDUES 151-204
Gene Name(s): F7 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
413
Query on 413

H (S)-[(R)-2-(4-BENZYLOXY-3-METHOXY-PHENYL)- 2-(4-CARBAMIMIDOYL-PHENYLAMINO)-ACETYLAMINO]- PHENYL-ACETIC ACID
C31 H30 N4 O5
WGEGXJPYFSZDMU-IZLXSDGUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

H CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
413 Ki: 4 nM (100) BindingDB

Ki: 4 nM  BindingMOAD
Ki: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.169
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 95.00 α = 90.00
b = 95.00 β = 90.00
c = 115.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-14
  • Released Date: 2005-10-25
  • Deposition author(s): Ackermann, J., Alig, L., Banner, D.W., Boehm, H.-J., Groebke-Zbinden, K., Hilpert, K., Lave, T., Kuehne, H., Obst-Sander, U., Riederer, M.A., Stahl, M., Tschopp, T.B., Weber, L., Wessel, H.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4