1VPE

CRYSTALLOGRAPHIC ANALYSIS OF PHOSPHOGLYCERATE KINASE FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA

Structural Biology Knowledgebase: 1VPE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VPE

Classification: TRANSFERASE

Total Structure Weight: 43762.86

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOGLYCERATE KINASE A 398 Thermotoga maritima EC#: 2.7.2.3 IUBMB
Mutation: L250V, I394M, A395R, D396I
Gene Name(s): pgk/tpi TM_0689

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3PG
Query on 3PG

A 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.198
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 62.01 α = 90.00
b = 76.86 β = 90.00
c = 87.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-05-06
  • Released Date: 1998-06-17
  • Deposition author(s): Auerbach, G., Huber, R., Graettinger, M., Zaiss, K., Schurig, H., Jaenicke, R., Jacob, U.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4