1VHN

Crystal structure of a putative flavin oxidoreductase with flavin

Structural Biology Knowledgebase: 1VHN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1VHN

Classification: Structural genomics unknown function

Total Structure Weight: 37640.30

Macromolecule Entities
Molecule Chains Length Organism Details
putative flavin oxidoreductase A 318 Thermotoga maritima Mutation: M12M, M36M, M44M, K101E, M267M, M289M, M300M
Gene Name(s): TM_0096 Tmari_0093
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.189
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 80.28 α = 90.00
b = 96.44 β = 90.00
c = 93.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-01
  • Released Date: 2003-12-30
  • Deposition author(s): Structural GenomiX

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4