1VGY

Crystal structure of succinyl diaminopimelate desuccinylase

Structural Biology Knowledgebase: 1VGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VGY

Classification: Structural genomics unknown function

Total Structure Weight: 86192.02

Macromolecule Entities
Molecule Chains Length Organism Details
succinyl-diaminopimelate desuccinylase A, B 393 Neisseria meningitidis EC#: 3.5.1.18 IUBMB
Mutation: L30M, L44M, D48N, M102M, M174M, I335M, A373V
Gene Name(s): dapE NMB1530

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.213
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.65 α = 90.00
b = 56.50 β = 103.19
c = 101.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-03
  • Released Date: 2003-11-25
  • Deposition author(s): Structural GenomiX

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name