1VE6

Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1

Structural Biology Knowledgebase: 1VE6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1VE6

Classification: HYDROLASE

Total Structure Weight: 126987.27

Macromolecule Entities
Molecule Chains Length Organism Details
Acylamino-acid-releasing enzyme A, B 582 Aeropyrum pernix EC#: 3.4.19.1 IUBMB
Gene Name(s): APE_1547.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

A, B B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.193
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.73 α = 90.00
b = 104.74 β = 90.00
c = 170.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-27
  • Released Date: 2004-11-02
  • Deposition author(s): Bartlam, M., Wang, G., Gao, R., Yang, H., Zhao, X., Xie, G., Cao, S., Feng, Y., Rao, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update