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Crystal Structure Of Nad+-Dependent DNA Ligase
 
 
DOI:10.2210/pdb1v9p/pdb
1V9P
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ligase
    Structure Weight: 135468.80
     
    Molecule:DNA ligase
    Polymer:1Type:polypeptide(L)Length:584
    Chains:A, B
    EC#:6.5.1.2 Go to IUBMB EC entry  
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Thermus filiformis Go to NCBI Taxonomy entry Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1DGT  THE PREVIOUSLY DEPOSITED PDB COORDINATE(1DGT) HAD INCORRECT PORTION BECAUSE OF IMPERFECT AMINO ACID SEQUENCE, WHICH WAS INFORMED BY OTHER GROUP. THEREFORE, WE ARE GOING TO REPLACE THE OLD COORDINATE WITH THE NEW ONE, WHICH WAS MODIFIED ACCORDING TO THE CORRECT AMINO ACID SEQUENCE. Entry 1DGT is obsoleted and superceded by this entry. 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    AMP     ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P 3DLigand Explorer Link out to Ligand Expos:AMP Link out to SuperLigands:AMP Link out to SuperHapten:AMP
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Lee, J.Y.,   Chang, C.,   Song, H.K.,   Moon, J.,   Yang, J.K.,   Kim, H.K.,   Kwon, S.K.,   Suh, S.W.

    Deposition:   2004-01-27
    Release:   2004-03-30
    Last Modified (REVDAT):   2009-02-24

    Previous versions: 1DGT
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.90
    R-Value: 0.232 (obs.)
    R-Free: 0.293
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 89.21 α = 90.00 
    b = 117.33 β = 115.09 
    c = 97.48 γ = 90.00