1V4T

Crystal structure of human glucokinase

Structural Biology Knowledgebase: 1V4T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1V4T

Classification: TRANSFERASE

Total Structure Weight: 50826.04

Macromolecule Entities
Molecule Chains Length Organism Details
glucokinase isoform 2 A 451 Homo sapiens EC#: 2.7.1.2 IUBMB
Fragment: RESIDUES 15-465
Gene Name(s): GCK Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.237
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.18 α = 90.00
b = 103.18 β = 90.00
c = 281.02 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-19
  • Released Date: 2004-03-30
  • Deposition author(s): Kamata, K., Mitsuya, M., Nishimura, T., Eiki, J., Nagata, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4