1UR3

CRYSTAL STRUCTURE OF THE APO FORM OF THE E.COLI YDHF PROTEIN

Structural Biology Knowledgebase: 1UR3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UR3

Classification: OXIDOREDUCTASE

Total Structure Weight: 36673.91

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL OXIDOREDUCTASE YDHF M 319 Escherichia coli EC#: 1 IUBMB
Gene Name(s): ydhF b1647 JW1639

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

M SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
M L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.200
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.72 α = 90.00
b = 87.72 β = 90.00
c = 66.17 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-24
  • Released Date: 2003-12-04
  • Deposition author(s): Jeudy, S., Claverie, J.M., Abergel, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4