1UJ5

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with ribose-5-phosphate

Structural Biology Knowledgebase: 1UJ5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UJ5

Classification: ISOMERASE

Total Structure Weight: 24397.12

Macromolecule Entities
Molecule Chains Length Organism Details
ribose 5-phosphate isomerase A 227 Thermus thermophilus EC#: 4.3.1.17 IUBMB 5.3.1.6 IUBMB
Gene Name(s): rpiA TT_C0932

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5RP
Query on 5RP

A RIBULOSE-5-PHOSPHATE
C5 H11 O8 P
FNZLKVNUWIIPSJ-UHNVWZDZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
5RP N/A in BindingDB
Ki: 890000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.188
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.89 α = 90.00
b = 62.01 β = 90.00
c = 131.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-26
  • Released Date: 2004-07-13
  • Deposition author(s): Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values